PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018922.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 662aa    MW: 75076.9 Da    PI: 7.03
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018922.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.92.6e-1152896573372
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  + L++cA+av+s d++ a++l+++++++ sp g++++Rla yf++AL+arla+s +  y+ l + +t+    +e l+a++++   +P+ k+ ++ aN+
  Pbr018922.1 289 TMLTQCAQAVASYDQRTASELIKKIRQHTSPCGEATERLAYYFANALEARLAGSRTPSYSPLLSPQTP---ATEILKAHQVYITSCPFTKMLYFFANR 383
                  689**************************************************999999999777777...89************************* PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  +I++ +e+++r+HiiDf+is+G+QWp+L+q L++R +gpp+lRiT+++ p++g   +e++eet +rL+k+A+++ vpfe+nv +a+++e++++e+L+v
  Pbr018922.1 384 TIMKLAENATRLHIIDFGISYGFQWPCLIQRLSERCGGPPNLRITAIELPQPGfrPTERVEETMRRLEKYAKRFVVPFEYNV-IAQKWETIRFEDLKV 480
                  ****************************************************9****************************9.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  ++ E ++Vn++ +l +++de+v ++s+rd+vL+l+k+++P+++ +   +  +ns+ F++rf eal +ys+lfd++ea++pre+e+r + E ++ gr+i
  Pbr018922.1 481 DRSELTVVNCMRRLRHIPDETVVMSSPRDTVLNLIKKINPDLFLHGLVNGTYNSPFFVKRFREALFHYSSLFDMFEATIPREDEHRLMFEGAIYGRDI 578
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                  +nvvaceg er+er et+++W+ r ++aGFk+vpl+++ + ++k++l+ +   d +r+ e+ +++++gWk+r +++++a
  Pbr018922.1 579 MNVVACEGLERVERPETYKHWQVRYQRAGFKQVPLDQELMRKVKAMLKLMRyHDDFRIYEDGHWMLQGWKGRIVMALCA 657
                  ************************************************9999999********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.067261638IPR005202Transcription factor GRAS
PfamPF035149.0E-113289657IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MERFTVGHGS NQNLGNHGST NPIFLPTNLD HNPSDSRSSQ IPVNGFQVNH EPTNTLFLPP  60
NPDHPSESGF SSSGSDGDTF DISVCNHPVL KYISDILLEE DLEGKPCMLQ DCLALQAAEK  120
SFYDVLNPKG RSSSQSPLPV DRSFENSDDD FTECCHSSIG CVAARTDSVS GSETSHVQSC  180
PVESSSDAYN STYRLKSKKN HLREDGDYTE EGRSNKQSAA SADGPEPQEM FDEVLLYKDA  240
RHAFESCSDD QSVKTDGSGK LKCNKQPKVS KAARSKTKNK NRELVDLCTM LTQCAQAVAS  300
YDQRTASELI KKIRQHTSPC GEATERLAYY FANALEARLA GSRTPSYSPL LSPQTPATEI  360
LKAHQVYITS CPFTKMLYFF ANRTIMKLAE NATRLHIIDF GISYGFQWPC LIQRLSERCG  420
GPPNLRITAI ELPQPGFRPT ERVEETMRRL EKYAKRFVVP FEYNVIAQKW ETIRFEDLKV  480
DRSELTVVNC MRRLRHIPDE TVVMSSPRDT VLNLIKKINP DLFLHGLVNG TYNSPFFVKR  540
FREALFHYSS LFDMFEATIP REDEHRLMFE GAIYGRDIMN VVACEGLERV ERPETYKHWQ  600
VRYQRAGFKQ VPLDQELMRK VKAMLKLMRY HDDFRIYEDG HWMLQGWKGR IVMALCALKP  660
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-432916358348GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375906.10.0PREDICTED: scarecrow-like protein 30
RefseqXP_009375905.10.0PREDICTED: scarecrow-like protein 30
TrEMBLD9ZJB10.0D9ZJB1_MALDO; SCL domain class transcription factor
STRINGPOPTR_0001s24890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-172GRAS family protein